QUFIND
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QUFINDV
*
This module is used for comparing two viral sequences(
Single Sequence
).
Enter 1
st
Sequence in fasta format
Auto-fill with Example
Clear Input
OR
Enter 2
nd
Sequence in fasta format
Auto-fill with Example
Clear Input
OR
Note:
1. Paste single sequence at a time in each box.
2. Sequence should be aligned and trimmed first. Then, paste/upload in each box.
Choose model for motif search:
Non-Overlapping model
Overlapping model
Configure Quadreplexes or Motif parameters:
Nucleobase to search:
G
C
A
T
Min. Stem size:
2
3
Max. Stem size:
4
5
Min. loop length
1
2
3
4
5
6
7
8
9
10
Max. loop length
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
Do you want to search for atypical motifs?
Bulges:
0
1
2
3
4
5
Mismatches:
0
1
2
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